PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000200600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 307aa    MW: 35113.9 Da    PI: 5.3797
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000200600genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.8e-071483148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......................TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......................kgRtlkqcksrwqkyl 48
                     rg+WT eEd +l + +   G ++W+ +++                         + R++k+c++rw +yl
    MDP0000200600 14 RGPWTIEEDHKLMNFILNNGIHCWRMVPKLADfhslhpllrldphqiilygdlgLLRCGKSCRLRWINYL 83
                     89********************999999999999999999999999999999**99************97 PP

2Myb_DNA-binding48.32.3e-1589132146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+ E+   ++++  lG++ W++Ia++++ gRt++++k++w++
    MDP0000200600  89 RGAFTEXEENEMIQLHSCLGNR-WSKIASHFP-GRTDNEIKNHWNT 132
                      89********************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-19586IPR009057Homeodomain-like
PROSITE profilePS500908.792983IPR017877Myb-like domain
SuperFamilySSF466897.08E-2411130IPR009057Homeodomain-like
SMARTSM007170.21385IPR001005SANT/Myb domain
PfamPF002495.4E-61483IPR001005SANT/Myb domain
PROSITE profilePS5129424.53984138IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2487139IPR009057Homeodomain-like
SMARTSM007173.3E-1388136IPR001005SANT/Myb domain
PfamPF002491.1E-1389132IPR001005SANT/Myb domain
CDDcd001672.19E-991132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRMV PKLADFHSLH PLLRLDPHQI  60
ILYGDLGLLR CGKSCRLRWI NYLRPDLKRG AFTEXEENEM IQLHSCLGNR WSKIASHFPG  120
RTDNEIKNHW NTRIKKRLKH LGVDALTHKP IEEKESTEEN KETITLHSNI TSSSSEEGLH  180
ESPSNGLEAK ILQDSYGNEG FPESDEKLQN EVQLAPLDDT NDILKNYEVF CGSLDLGTLX  240
LNQGITNTSS MSNSYSTSSF SIEDSNNASI SIAESMQENC RQHWVDTVDS MLPWDGFNNL  300
EQDLFFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24121385108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341354.10.0PREDICTED: myb-related protein 315
TrEMBLM5WZ011e-148M5WZ01_PRUPE; Uncharacterized protein
STRINGGLYMA16G06900.11e-114(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.13e-78myb domain protein 40